Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs200817394 chr15:52055303 TA/AA 5.22E-5 502 31.8 30.13 17.53 KM Plot
THCA rs200877576 chr10:131934369 TAGCCAGGAGCCCCTAC/T 1.18E-5 502 31.47 33.3 27.18 KM Plot
THCA rs200963151 chr21:47747310 C/T 9.14E-6 501 31.6 32.27 11.87 KM Plot
THCA rs201115820 chr5:1595416 C/CATA 2.25E-7 490 31.27 36.9 21.97 KM Plot
THCA rs201124359 chr20:61480516 C/CA 6.56E-5 488 31.03 33.7 37.48 KM Plot
THCA rs201125668 chr2:86942938 ATTAG/A 4.31E-9 495 32.03 27.7 14.73 KM Plot
THCA rs201133598 chr1:152960916 GC/G 0.000137 503 31.5 31.83 37.7 KM Plot
THCA rs2011770 chr3:139262295 A/C 5.3E-5 499 31.47 33.8 19.32 KM Plot
THCA rs2011981 chr1:41540853 A/T 1.2E-7 502 27.33 30.48 31.92 KM Plot
THCA rs2011982 chr1:41540861 T/C 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs2015775 chr13:108842155 C/A 2.8E-6 481 30.63 31.8 31.45 KM Plot
THCA rs201684737 chr3:53960787 T/C 1.31E-8 498 31.47 31.02 17.8 KM Plot
THCA rs201705751 chr2:238425473 AGGAT/A 5.2E-8 491 31.5 31.38 34.1 KM Plot
THCA rs201711250 chr15:72031449 A/C 4.01E-10 500 31.47 33.98 20 KM Plot
THCA rs201822164 chr5:178270214 T/TA 3.62E-5 493 31.53 32.47 24.9 KM Plot